CIN++: Enhancing Topological Message Passing

6 Jun 2023  ·  Lorenzo Giusti, Teodora Reu, Francesco Ceccarelli, Cristian Bodnar, Pietro Liò ·

Graph Neural Networks (GNNs) have demonstrated remarkable success in learning from graph-structured data. However, they face significant limitations in expressive power, struggling with long-range interactions and lacking a principled approach to modeling higher-order structures and group interactions. Cellular Isomorphism Networks (CINs) recently addressed most of these challenges with a message passing scheme based on cell complexes. Despite their advantages, CINs make use only of boundary and upper messages which do not consider a direct interaction between the rings present in the underlying complex. Accounting for these interactions might be crucial for learning representations of many real-world complex phenomena such as the dynamics of supramolecular assemblies, neural activity within the brain, and gene regulation processes. In this work, we propose CIN++, an enhancement of the topological message passing scheme introduced in CINs. Our message passing scheme accounts for the aforementioned limitations by letting the cells to receive also lower messages within each layer. By providing a more comprehensive representation of higher-order and long-range interactions, our enhanced topological message passing scheme achieves state-of-the-art results on large-scale and long-range chemistry benchmarks.

PDF Abstract

Results from the Paper


Task Dataset Model Metric Name Metric Value Global Rank Result Benchmark
Graph Classification HIV dataset CIN++ ROC-AUC 80.63 # 1
Graph Classification HIV dataset CIN++-small ROC-AUC 80.26 # 2
Graph Classification MUTAG CIN++ Accuracy 94.4% # 7
Graph Classification NCI1 CIN++ Accuracy 85.3% # 10
Graph Classification NCI109 CIN++ Accuracy 84.5 # 4
Graph Classification Peptides-func CIN++-500k AP 0.6569±0.0117 # 14
Graph Regression Peptides-struct CIN++-500k MAE 0.2523 # 14
Graph Classification PROTEINS CIN++ Accuracy 80.5 # 6
Graph Classification PTC CIN++ Accuracy 73.2% # 8
Graph Regression ZINC CIN++ MAE 0.074 # 8
Graph Regression ZINC CIN++-small MAE 0.091 # 13
Graph Regression ZINC CIN++-500k MAE 0.077 # 10

Methods


No methods listed for this paper. Add relevant methods here