BioRED is a first-of-its-kind biomedical relation extraction dataset with multiple entity types (e.g. gene/protein, disease, chemical) and relation pairs (e.g. gene–disease; chemical–chemical) at the document level, on a set of600 PubMed abstracts. Furthermore, BioRED label each relation as describing either a novel finding or previously known background knowledge, enabling automated algorithms to differentiate between novel and background information.
Benchmarks
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BioRED
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PubMedBERT-CRF
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BioRED
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PubMedBERT
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BioRED
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PubMedBERT
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Papers
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