Search Results for author: Halil Kilicoglu

Found 19 papers, 5 papers with code

Examining the Causal Effect of First Names on Language Models: The Case of Social Commonsense Reasoning

1 code implementation1 Jun 2023 Sullam Jeoung, Jana Diesner, Halil Kilicoglu

As language models continue to be integrated into applications of personal and societal relevance, ensuring these models' trustworthiness is crucial, particularly with respect to producing consistent outputs regardless of sensitive attributes.

Commonsense-Aware Prompting for Controllable Empathetic Dialogue Generation

no code implementations2 Feb 2023 Yiren Liu, Halil Kilicoglu

Improving the emotional awareness of pre-trained language models is an emerging important problem for dialogue generation tasks.

Dialogue Generation

Developing a Knowledge Graph Framework for Pharmacokinetic Natural Product-Drug Interactions

1 code implementation24 Sep 2022 Sanya B. Taneja, Tiffany J. Callahan, Mary F. Paine, Sandra L. Kane-Gill, Halil Kilicoglu, Marcin P. Joachimiak, Richard D. Boyce

NP-KG is a heterogeneous KG with biomedical ontologies, linked data, and full texts of the scientific literature, constructed with the Phenotype Knowledge Translator framework and the semantic relation extraction systems, SemRep and Integrated Network and Dynamic Reasoning Assembler.

Relation Extraction

UIUC\_BioNLP at SemEval-2021 Task 11: A Cascade of Neural Models for Structuring Scholarly NLP Contributions

1 code implementation SEMEVAL 2021 Haoyang Liu, M. Janina Sarol, Halil Kilicoglu

We propose a cascade of neural models that performs sentence classification, phrase recognition, and triple extraction to automatically structure the scholarly contributions of NLP publications.

Sentence Sentence Classification

Discovering novel drug-supplement interactions using a dietary supplements knowledge graph generated from the biomedical literature

no code implementations24 Jun 2021 Dalton Schutte, Jake Vasilakes, Anu Bompelli, Yuqi Zhou, Marcelo Fiszman, Hua Xu, Halil Kilicoglu, Jeffrey R. Bishop, Terrence Adam, Rui Zhang

MATERIALS AND METHODS: We created SemRepDS (an extension of SemRep), capable of extracting semantic relations from abstracts by leveraging a DS-specific terminology (iDISK) containing 28, 884 DS terms not found in the UMLS.

UIUC_BioNLP at SemEval-2021 Task 11: A Cascade of Neural Models for Structuring Scholarly NLP Contributions

1 code implementation12 May 2021 Haoyang Liu, M. Janina Sarol, Halil Kilicoglu

We propose a cascade of neural models that performs sentence classification, phrase recognition, and triple extraction to automatically structure the scholarly contributions of NLP publications.

Keyphrase Extraction Relation Extraction +2

Drug Repurposing for COVID-19 via Knowledge Graph Completion

1 code implementation19 Oct 2020 Rui Zhang, Dimitar Hristovski, Dalton Schutte, Andrej Kastrin, Marcelo Fiszman, Halil Kilicoglu

The models were trained and assessed using a time slicing approach and the predicted drugs were compared with a list of drugs reported in the literature and evaluated in clinical trials.

Knowledge Graph Completion

Attention-Gated Graph Convolutions for Extracting Drug Interaction Information from Drug Labels

no code implementations28 Oct 2019 Tung Tran, Ramakanth Kavuluru, Halil Kilicoglu

As drug-drug interactions (DDIs) may lead to preventable adverse events, being able to extract DDIs from drug labels into a machine-processable form is an important step toward effective dissemination of drug safety information.

Relation Extraction Transfer Learning

A Multi-Task Learning Framework for Extracting Drugs and Their Interactions from Drug Labels

no code implementations17 May 2019 Tung Tran, Ramakanth Kavuluru, Halil Kilicoglu

As drug-drug interactions (DDIs) may cause adverse reactions, being able to extracting DDIs from drug labels into machine-readable form is an important effort in effectively deploying drug safety information.

Multi-Task Learning named-entity-recognition +5

TextFlow: A Text Similarity Measure based on Continuous Sequences

no code implementations ACL 2017 Yassine Mrabet, Halil Kilicoglu, Dina Demner-Fushman

Text similarity measures are used in multiple tasks such as plagiarism detection, information ranking and recognition of paraphrases and textual entailment.

Natural Language Inference Position +2

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