Search Results for author: Dan Nguyen

Found 38 papers, 2 papers with code

PULSAR Effect: Revealing Potential Synergies in Combined Radiation Therapy and Immunotherapy via Differential Equations

no code implementations8 Feb 2024 Samiha Rouf, Casey Moore, Debabrata Saha, Dan Nguyen, MaryLena Bleile, Robert Timmerman, Hao Peng, Steve Jiang

Therefore, a synergistic effect between immunotherapy and PULSAR is observed when the pulses are spaced out by a certain number of days.

Mathematical Modeling of the Synergetic Effect between Radiotherapy and Immunotherapy

no code implementations28 Dec 2023 Yixun Xing, Casey Moore, Debabrata Saha, Dan Nguyen, MaryLena Bleile, Xun Jia, Robert Timmerman, Hao Peng, Steve Jiang

Achieving effective synergy between radiotherapy and immunotherapy is critical for optimizing tumor control and treatment outcomes.

Thalamic nuclei segmentation from T$_1$-weighted MRI: unifying and benchmarking state-of-the-art methods with young and old cohorts

no code implementations26 Sep 2023 Brendan Williams, Dan Nguyen, Julie Vidal, Alzheimer's Disease Neuroimaging Initiative, Manojkumar Saranathan

The thalamus and its constituent nuclei are critical for a broad range of cognitive and sensorimotor processes, and implicated in many neurological and neurodegenerative conditions.

Benchmarking Segmentation +1

Prior Guided Deep Difference Meta-Learner for Fast Adaptation to Stylized Segmentation

no code implementations19 Nov 2022 Anjali Balagopal, Dan Nguyen, Ti Bai, Michael Dohopolski, Mu-Han Lin, Steve Jiang

With adaptation based on only the first three patients, the average DSCs were improved from 78. 6, 71. 9, 63. 0, 52. 2, 46. 3 and 69. 6 to 84. 4, 77. 8, 73. 0, 77. 8, 70. 5, 68. 1, for CTVstyle1, CTVstyle2, and CTVstyle3, Parotidsuperficial, Rectumsuperior, and Rectumposterior, respectively, showing the great potential of the Priorguided DDL network for a fast and effortless adaptation to new practice styles

Segmentation

Uncertainty estimations methods for a deep learning model to aid in clinical decision-making -- a clinician's perspective

no code implementations2 Oct 2022 Michael Dohopolski, Kai Wang, Biling Wang, Ti Bai, Dan Nguyen, David Sher, Steve Jiang, Jing Wang

Especially for smaller, single institutional datasets, it may be important to evaluate multiple estimations techniques before incorporating a model into clinical practice.

Decision Making Specificity +1

Deep Learning based Direct Segmentation Assisted by Deformable Image Registration for Cone-Beam CT based Auto-Segmentation for Adaptive Radiotherapy

no code implementations7 Jun 2022 Xiao Liang, Howard Morgan, Ti Bai, Michael Dohopolski, Dan Nguyen, Steve Jiang

We found that DL-based direct segmentation on CBCT trained with pseudo labels and without influencer volumes shows poor performance compared to DIR-based segmentation.

Image Registration Segmentation

Segmentation by Test-Time Optimization (TTO) for CBCT-based Adaptive Radiation Therapy

no code implementations8 Feb 2022 Xiao Liang, Jaehee Chun, Howard Morgan, Ti Bai, Dan Nguyen, Justin C. Park, Steve Jiang

Firstly, we trained a population model with 200 patients, and then applied TTO to the remaining 39 test patients by refining the trained population model to obtain 39 individualized models.

Image Registration

A Proof-of-Concept Study of Artificial Intelligence Assisted Contour Revision

no code implementations28 Jul 2021 Ti Bai, Anjali Balagopal, Michael Dohopolski, Howard E. Morgan, Rafe McBeth, Jun Tan, Mu-Han Lin, David J. Sher, Dan Nguyen, Steve Jiang

The proposed clinical workflow of AIACR is as follows given an initial contour that requires a clinicians revision, the clinician indicates where a large revision is needed, and a trained deep learning (DL) model takes this input to update the contour.

Site-Agnostic 3D Dose Distribution Prediction with Deep Learning Neural Networks

no code implementations15 Jun 2021 Maryam Mashayekhi, Itzel Ramirez Tapia, Anjali Balagopal, Xinran Zhong, Azar Sadeghnejad Barkousaraie, Rafe McBeth, Mu-Han Lin, Steve Jiang, Dan Nguyen

Typically, the current dose prediction models are limited to small amounts of data and require re-training for a specific site, often leading to suboptimal performance.

Latent Space Arc Therapy Optimization

no code implementations24 May 2021 Noah Bice, Mohamad Fakhreddine, RuiQi Li, Dan Nguyen, Christopher Kabat, Pamela Myers, Niko Papanikolaou, Neil Kirby

Volumetric modulated arc therapy planning is a challenging problem in high-dimensional, non-convex optimization.

Deep learning-based COVID-19 pneumonia classification using chest CT images: model generalizability

no code implementations18 Feb 2021 Dan Nguyen, Fernando Kay, Jun Tan, Yulong Yan, Yee Seng Ng, Puneeth Iyengar, Ron Peshock, Steve Jiang

We trained nine identical DL-based classification models by using combinations of the datasets with a 72% train, 8% validation, and 20% test data split.

Computed Tomography (CT) General Classification

PSA-Net: Deep Learning based Physician Style-Aware Segmentation Network for Post-Operative Prostate Cancer Clinical Target Volume

no code implementations15 Feb 2021 Anjali Balagopal, Howard Morgan, Michael Dohopoloski, Ramsey Timmerman, Jie Shan, Daniel F. Heitjan, Wei Liu, Dan Nguyen, Raquibul Hannan, Aurelie Garant, Neil Desai, Steve Jiang

A classifier is trained to identify which physician has contoured the CTV from just the contour and corresponding CT scan, to determine if physician styles are consistent and learnable.

Segmentation

Deep High-Resolution Network for Low Dose X-ray CT Denoising

no code implementations1 Feb 2021 Ti Bai, Dan Nguyen, Biling Wang, Steve Jiang

Despite the promising noise removal ability of DL models, people have observed that the resolution of the DL-denoised images is compromised, decreasing their clinical value.

Denoising SSIM +1

Deep Interactive Denoiser (DID) for X-Ray Computed Tomography

no code implementations30 Nov 2020 Ti Bai, Biling Wang, Dan Nguyen, Bao Wang, Bin Dong, Wenxiang Cong, Mannudeep K. Kalra, Steve Jiang

However, there exists two challenges regarding the DL-based denoisers: 1) a trained model typically does not generate different image candidates with different noise-resolution tradeoffs which sometimes are needed for different clinical tasks; 2) the model generalizability might be an issue when the noise level in the testing images is different from that in the training dataset.

Deep Dose Plugin Towards Real-time Monte Carlo Dose Calculation Through a Deep Learning based Denoising Algorithm

no code implementations30 Nov 2020 Ti Bai, Biling Wang, Dan Nguyen, Steve Jiang

As a result, the whole MC dose calculation pipeline can be finished within 0. 15 seconds, including both GPU MC dose calculation and deep learning based denoising, achieving the real time efficiency needed for some radiotherapy applications, such as online adaptive radiotherapy.

Denoising Weakly-supervised Learning

A comparison of Monte Carlo dropout and bootstrap aggregation on the performance and uncertainty estimation in radiation therapy dose prediction with deep learning neural networks

no code implementations1 Nov 2020 Dan Nguyen, Azar Sadeghnejad Barkousaraie, Gyanendra Bohara, Anjali Balagopal, Rafe McBeth, Mu-Han Lin, Steve Jiang

We propose to use Monte Carlo dropout (MCDO) and the bootstrap aggregation (bagging) technique on deep learning models to produce uncertainty estimations for radiation therapy dose prediction.

Dose Prediction with Deep Learning for Prostate Cancer Radiation Therapy: Model Adaptation to Different Treatment Planning Practices

no code implementations30 Jun 2020 Roya Norouzi Kandalan, Dan Nguyen, Nima Hassan Rezaeian, Ana M. Barragan-Montero, Sebastiaan Breedveld, Kamesh Namuduri, Steve Jiang, Mu-Han Lin

For the transfer learning, we selected patient cases planned with three different styles from the same institution and one style from a different institution to adapt the source model to four target models.

Transfer Learning

Probabilistic self-learning framework for Low-dose CT Denoising

no code implementations30 May 2020 Ti Bai, Dan Nguyen, Biling Wang, Steve Jiang

Despite the indispensable role of X-ray computed tomography (CT) in diagnostic medicine field, the associated ionizing radiation is still a major concern considering that it may cause genetic and cancerous diseases.

Computed Tomography (CT) Denoising +1

Generalizability issues with deep learning models in medicine and their potential solutions: illustrated with Cone-Beam Computed Tomography (CBCT) to Computed Tomography (CT) image conversion

no code implementations16 Apr 2020 Xiao Liang, Dan Nguyen, Steve Jiang

We trained a model on CBCT images acquired from one vendor's scanners for head and neck cancer patients and applied it to images from another vendor's scanners and for other disease sites.

Computed Tomography (CT) Transfer Learning

A reinforcement learning application of guided Monte Carlo Tree Search algorithm for beam orientation selection in radiation therapy

no code implementations14 Apr 2020 Azar Sadeghnejad-Barkousaraie, Gyanendra Bohara, Steve Jiang, Dan Nguyen

We propose a reinforcement learning strategy using Monte Carlo Tree Search capable of finding a superior beam orientation set and in less time than CG. We utilized a reinforcement learning structure involving a supervised learning network to guide Monte Carlo tree search (GTS) to explore the decision space of beam orientation selection problem.

Anatomy reinforcement-learning +1

Mining Domain Knowledge: Improved Framework towards Automatically Standardizing Anatomical Structure Nomenclature in Radiotherapy

no code implementations4 Dec 2019 Qiming Yang, Hongyang Chao, Dan Nguyen, Steve Jiang

To solve these problems, we propose an automated structure nomenclature standardization framework, 3D Non-local Network with Voting (3DNNV).

Incorporating human and learned domain knowledge into training deep neural networks: A differentiable dose volume histogram and adversarial inspired framework for generating Pareto optimal dose distributions in radiation therapy

no code implementations16 Aug 2019 Dan Nguyen, Rafe McBeth, Azar Sadeghnejad Barkousaraie, Gyanendra Bohara, Chenyang Shen, Xun Jia, Steve Jiang

We propose a novel domain specific loss, which is a differentiable loss function based on the dose volume histogram, and combine it with an adversarial loss for the training of deep neural networks to generate Pareto optimal dose distributions.

Navigate

Intelligent Inverse Treatment Planning via Deep Reinforcement Learning, a Proof-of-Principle Study in High Dose-rate Brachytherapy for Cervical Cancer

no code implementations25 Nov 2018 Chenyang Shen, Yesenia Gonzalez, Peter Klages, Nan Qin, Hyunuk Jung, Liyuan Chen, Dan Nguyen, Steve B. Jiang, Xun Jia

While a treatment planning system can solve the optimization problem with given weights, adjusting the weights for high plan quality is performed by human.

Medical Physics

Generating Synthesized Computed Tomography (CT) from Cone-Beam Computed Tomography (CBCT) using CycleGAN for Adaptive Radiation Therapy

no code implementations31 Oct 2018 Xiao Liang, Liyuan Chen, Dan Nguyen, Zhiguo Zhou, Xuejun Gu, Ming Yang, Jing Wang, Steve Jiang

Dose calculation accuracy using sCT images has been improved over the original CBCT images, with the average Gamma Index passing rate increased from 95. 4% to 97. 4% for 1 mm/1% criteria.

Medical Physics

Fully Automated Organ Segmentation in Male Pelvic CT Images

no code implementations31 May 2018 Anjali Balagopal, Samaneh Kazemifar, Dan Nguyen, Mu-Han Lin, Raquibul Hannan, Amir Owrangi, Steve Jiang

Accurate segmentation of prostate and surrounding organs at risk is important for prostate cancer radiotherapy treatment planning.

Image Segmentation Organ Segmentation +2

Three-Dimensional Radiotherapy Dose Prediction on Head and Neck Cancer Patients with a Hierarchically Densely Connected U-net Deep Learning Architecture

no code implementations25 May 2018 Dan Nguyen, Xun Jia, David Sher, Mu-Han Lin, Zohaib Iqbal, Hui Liu, Steve Jiang

The treatment planning process for patients with head and neck (H&N) cancer is regarded as one of the most complicated due to large target volume, multiple prescription dose levels, and many radiation-sensitive critical structures near the target.

Accurate Real Time Localization Tracking in A Clinical Environment using Bluetooth Low Energy and Deep Learning

1 code implementation22 Nov 2017 Zohaib Iqbal, Da Luo, Peter Henry, Samaneh Kazemifar, Timothy Rozario, Yulong Yan, Kenneth Westover, Weiguo Lu, Dan Nguyen, Troy Long, Jing Wang, Hak Choy, Steve Jiang

Deep learning has started to revolutionize several different industries, and the applications of these methods in medicine are now becoming more commonplace.

TAG

A feasibility study for predicting optimal radiation therapy dose distributions of prostate cancer patients from patient anatomy using deep learning

no code implementations26 Sep 2017 Dan Nguyen, Troy Long, Xun Jia, Weiguo Lu, Xuejun Gu, Zohaib Iqbal, Steve Jiang

With the advancement of treatment modalities in radiation therapy for cancer patients, outcomes have improved, but at the cost of increased treatment plan complexity and planning time.

Anatomy

Cannot find the paper you are looking for? You can Submit a new open access paper.